Tomasz Furmanek

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Senioringeniør
Telefon: 55238500
Avdeling: Reproduksjon og utviklingsbiologi

Publikasjoner

Faglige foredrag

2018

Det interbrankiale lymfoide vevet, et unikt lymfoid vev i gjelle hos Atlantisk laks

Lars Austbø, Ida Bergva Aas, Rolf Edvardsen, Tomasz Furmanek, Erling Olaf Koppang
2018

Transkriptom analyser avdekker rognkjeksens tidlige immunresponser og gir innblikk i evolusjonshistorien.

Håvard Øritsland Eggestøl, Harald sæbø Lunde, Anita Rønneseth, David Fredman, Kjell Petersen, Charitra Kumar Mishra, Tomasz Furmanek, Duncan John Colquhoun, Heidrun Inger Wergeland, Gyri Teien Haugland
2018

RNA-Seq reveals novel impacts of PAHs on excitation-transcription coupling in cardiomyocytes

Elin Sørhus, Sonnich Meier, John P. Incardona, Rolf Edvardsen, Tomasz Furmanek
2017

A comparative study of diploid and triploid Atlantic salmon post-smolts upon SAV-3 bath challenge and their immune transcriptomatic responses

Noelia Nuñez-Ortiz, Lindsey Moore, Tomasz Furmanek, Rolf Edvardsen, Samuel A. M. Martin, Tom Ole Nilsen, Jiraporn Jarungsriapisit, Per Gunnar Fjelldal, Sigurd Olav Stefansson, Geir Lasse Taranger, Sonal Patel
2017

RNA-Seq reveals novel impacts of PAHs on excitation-transcription coupling in cardiomyocytes

Elin Sørhus, Sonnich Meier, John P. Incardona, Edvardsen Rolf, Nathaniel Scholz, Sissel Jentoft, Giles W Goetz, Tomasz Furmanek
2016

Targeting germ cell survival factors to produce sterile salmon

Lene Kleppe, Anna Wargelius, Helge Tveiten, Sven Dirk Leininger, Kai Ove Skaftnesmo, Tomasz Furmanek, Rüdiger W. Schulz, Geir Lasse Taranger, Eva Andersson, Rolf Edvardsen
2016

Targeting germ cell survival factors to produce sterile salmon through vaccination

Lene Kleppe, Anna Wargelius, Helge Tveiten, Sven Dirk Leininger, Kai Ove Skaftnesmo, Tomasz Furmanek, Rüdiger W. Schulz, Geir Lasse Taranger, Eva Andersson, Rolf Edvardsen
2016

Sterile salmon by targeting factors involved in germ cell survival: novel strategies for sustainable fish farming

Lene Kleppe, Rolf Edvardsen, Helge Tveiten, Sven Dirk Leininger, Kai Ove Skaftnesmo, Eva Andersson, Geir Lasse Taranger, Rüdiger W. Schulz, Tomasz Furmanek, Anna Wargelius
2016

Targeted mutagenesis in Atlantic salmon using the CRISPR/Cas9 system

Rolf Edvardsen, Lene Kleppe, Kai Ove Skaftnesmo, Sven Dirk Leininger, Tomasz Furmanek, Geir Lasse Taranger, Rüdiger W. Schulz, Eva Andersson, Anna Wargelius
2016

Bruk av CRISPR/Cas9 i laks

Rolf Edvardsen, Lene Kleppe, Kai Ove Skaftnesmo, Sven Dirk Leininger, Tomasz Furmanek, Geir Lasse Taranger, Rüdiger W. Schulz, Eva Andersson, Anna Wargelius
2016

Genome resequencing of geographically distinct Atlantic Salmon (Salmo salar) populations reveals adaptive divergence

Rolf Edvardsen, Erik Nordtorp Kjærner-Semb, Fernando Ayllon, Tomasz Furmanek, Vidar Wennevik, Geir Dahle, Eero Niemelä, Mikhail Ozerov, Juha-Pekka Vähä, Kevin Glover, Carl Johan Rubin, Anna Wargelius
2016

Adaptive plasticity in Atlantic salmon- genetic predisposition of time at maturity and environmental triggers

Rolf Edvardsen, Erik Nordtorp Kjærner-Semb, Fernando Ayllon, Tomasz Furmanek, Tom Johnny Hansen, Per Gunnar Fjelldal, Carl Johan Rubin, Lene Kleppe, Kai Ove Skaftnesmo, Elin Sørhus, Faezeh Mohammadi, Geir Dahle, Vidar Wennevik, Monica Favnebøe Solberg, Kevin Glover, Birgitta Norberg, Geir Lasse Taranger, Eva Andersson, Rüdiger W. Schulz, Anna Wargelius
2016

Transcriptomics identifies novel adverse outcome pathways from crude oil exposure in haddock early life history stages

Elin Sørhus, John P. Incardona, Tomasz Furmanek, Nathaniel Scholz, Sonnich Meier, Sissel Jentoft, Rolf Edvardsen
2016

Transcriptomics identifies novel adverse outcome pathways from crude oil exposure in haddock early life history stages

Sørhus Elin, Incardona John, Tomasz Furmanek, Nathaniel Scholz, Sonnich Meier, Sissel Jentoft, Rolf Edvardsen
2014

Transkriptomanalyse av atlantisk torsk - mekanismer for rask vekst

Rolf Edvardsen, Tomasz Furmanek, Teshome Bizauyehu, Igor Babiak, Matilde Skogen Chauton, Kai Kristoffer Lie, Ann-Elise Olderbakk Jordal, Elin Sørhus, Ørjan Karlsen, Terje van der Meeren, Anders Mangor-Jensen, Ivar Rønnestad
2013

GLOBAL TRANSCRIPTOME ANALYSIS IDENTIFIES REGULATED TRANSCRIPTS AND PATHWAYS ACTIVATED DURING OOGENESIS AND EARLY EMBRYOGENESIS IN ATLANTIC COD

Lene Kleppe, Rolf Edvardsen, Tomasz Furmanek, Geir Lasse Taranger, Anna Wargelius
2013

DEEP SEQUENCING REVEALS MINERALIZING NOTOCHORD TRANSCRIPTOME, DURING AXIAL SKELETON ENFORCEMENT FROM NOTOCHORD TO VERTEBRA IN ATLANTIC SALMON (SALMO SALAR L.)

Shou Wang, Tomasz Furmanek, Harald Kryvi, Christel Krossøy, Geir Kåre Totland, Sindre Grotmol, Anna Wargelius
2013

GLOBAL AND LOCAL METHYLATION PATTERN IN TRIPLOID AND DIPLOID AND TRIPLOID ATLANTIC SALMON

Anna Wargelius, Tomasz Furmanek, Rolf Edvardsen, Elin Sørhus, Per Gunnar Fjelldal, Tom Johnny Hansen
2013

TRANSCRIPTOMIC ANALYSIS OF DEVELOPING ATLANTIC COD - UNDERSTANDING THE MECHANISMS UNDERLYING HIGH GROWTH

Rolf Edvardsen, Tomasz Furmanek, Kai Kristoffer Lie, Ann-Elise Olderbakk Jordal, Elin Sørhus, Ørjan Karlsen, Terje van der Meeren, Anders Mangor-Jensen, Ivar Rønnestad
2012

The Atlantic salmon (Salmo Salar L.) notochord displays a dynamic transcriptome prior to and during vertebral segmentation

Shou Wang, Tomasz Furmanek, Harald Kryvi, Sindre Grotmol, Geir Kåre Totland, Christel Krossøy, Anna Wargelius
2012

Transcriptomic analysis of the salmon louse

Rolf Edvardsen, Stig Mæhle, Tomasz Furmanek, Ketil Malde, Bjørn Olav Kvamme, Sussie Trine Dalvin, Rasmus Skern-Mauritzen
2012

The Salmon Louse Genome Project

Rasmus Skern-Mauritzen, Ketil Malde, Tomasz Furmanek, Richard Reinhardt, Ben F Koop, Frank Nilsen
2001

Angiostatin-release from optimized alginate microcapsules

Therese Visted, Tomasz Furmanek, Per Øystein Sakariassen, BKL Sim, Morten Lund-Johansen, Rolf Bjerkvig
2001

Angiostatin release from alginate encapsulated 293-cells

Therese Visted, Tomasz Furmanek, Per Øystein Sakariassen, Karl-Henning Kalland, BKL Sim, Morten Lund-Johansen, Rolf Bjerkvig
2001

Cell encapsulation in cancer therapy

Therese Visted, Tomasz Furmanek, Per Øystein Sakariassen
2001

Cell encapsulation in cancer therapy

Therese Visted, Tomasz Furmanek, Per Øystein Sakariassen, William F. Foegler, BKL Sim, Rolf Bjerkvig
2000

Lynkurs i Flash

Tomasz Furmanek, Otto Grahl-Nielsen
2000

Nettkollokvering og orakeltjeneste

Tomasz Furmanek, Otto Grahl-Nielsen

Vitenskapelige artikler (NVI)

2018

Vgll3 and the Hippo pathway are regulated in Sertoli cells upon entry and during puberty in Atlantic salmon testis

Erik Nordtorp Kjærner-Semb, Fernando Ayllon, Lene Kleppe, Elin Sørhus, Kai Ove Skaftnesmo, Tomasz Furmanek, Frida Thyri Segafredo, Anders Thorsen, Per Gunnar Fjelldal, Tom Johnny Hansen, Geir Lasse Taranger, Eva Andersson, Rüdiger W. Schulz, Anna Wargelius, Rolf Edvardsen
Scientific Reports 8:1912 p. 1-11
2018

Transcriptome-wide mapping of signaling pathways and early immune responses in lumpfish leukocytes upon in vitro bacterial exposure

Håvard Øritsland Eggestøl, Harald Sæbø Lunde, Anita Rønneseth, David Fredman, Kjell Petersen, Charitra Kumar Mishra, Tomasz Furmanek, Duncan John Colquhoun, Heidrun Inger Wergeland, Gyri Teien Haugland
Scientific Reports 8:5261 p. 1-14
2017

Integrative testis transcriptome analysis reveals differentially expressed miRNAs and their mRNA targets during early puberty in Atlantic salmon

Kai Ove Skaftnesmo, Rolf Edvardsen, Tomasz Furmanek, D. Crespo, Eva Andersson, Lene Kleppe, Geir Lasse Taranger, Jan Bogerd, Rüdiger W. Schulz, Anna Wargelius
BMC Genomics 18
2017

bmp15l, figla, smc1bl, and larp6l are preferentially expressed in germ cells in Atlantic salmon (Salmo salar L.)

Lene Kleppe, Rolf Edvardsen, Tomasz Furmanek, Eva Andersson, Amélie Juanchich, Anna Wargelius
Molecular Reproduction and Development 84 p. 76-87
2017

Novel adverse outcome pathways revealed by chemical genetics in a developing marine fish

Elin Sørhus, John P. Incardona, Tomasz Furmanek, Giles W. Goetz, Nathaniel Scholz, Sonnich Meier, Rolf Edvardsen, Sissel Jentoft
eLIFE 6:e20707 p. 1-30
2016

Developmental transcriptomics in Atlantic haddock: Illuminating pattern formation and organogenesis in non-model vertebrates

Elin Sørhus, John P. Incardona, Tomasz Furmanek, Sissel Jentoft, Sonnich Meier, Rolf Edvardsen
Developmental Biology 411 p. 301-313
2016

First feed affects the expressions of microRNA and their targets in Atlantic cod

Teshome Tilahun Bizuayehu, Tomasz Furmanek, Ørjan Karlsen, Terje van der Meeren, Rolf Edvardsen, Ivar Rønnestad, Kristin Hamre, Steinar Daae Johansen, Igor Babiak
British Journal of Nutrition 115 p. 1145-1154
2016

Atlantic salmon populations reveal adaptive divergence of immune related genes - A duplicated genome under selection

Erik Nordtorp Kjærner-Semb, Fernando Ayllon, Tomasz Furmanek, Vidar Wennevik, Geir Dahle, Eero Niemelä, Mikhail Ozerov, Juha-Pekka Vähä, Kevin Glover, Carl J. Rubin, Anna Wargelius, Rolf Edvardsen
BMC Genomics 17:610 p. 1-12
2016

The two-step development of a duplex retina involves distinct events of cone and rod neurogenesis and differentiation

Ragnhild Valen, Mariann Eilertsen, Rolf Edvardsen, Tomasz Furmanek, Ivar Rønnestad, Terje van der Meeren, Ørjan Karlsen, Tom Ole Nilsen, Jon Vidar Helvik
Developmental Biology 416 p. 389-401
2016

Expression profiling identifies Sertoli and Leydig cell genes as Fsh targets in adult zebrafish testis

Diego Crespo, Luiz H. C. Assis, Tomasz Furmanek, Jan Bogerd, Rüdiger W. Schulz
Molecular and Cellular Endocrinology 437 p. 237-251
2015

The vgll3 Locus Controls Age at Maturity in Wild and Domesticated Atlantic Salmon(Salmo salar L.) Males

Fernando Ayllon, Erik Nordtorp Kjærner-Semb, Tomasz Furmanek, Vidar Wennevik, Monica Favnebøe Solberg, Geir Dahle, Geir Lasse Taranger, Kevin Glover, Markus Sällman Almén, Carl J. Rubin, Rolf Edvardsen, Anna Wargelius
PLoS Genetics 11:e1005628
2015

A comparison between egg trancriptomes of cod and salmon reveals species-specific traits in eggs for each species

Anna Wargelius, Tomasz Furmanek, Jérôme Montfort, Aurélie Le Cam, Lene Kleppe, Amélie Juanchich, Rolf Edvardsen, Geir Lasse Taranger, Julien Bobe
Molecular Reproduction and Development 82 p. 397-404
2015

Diet affects the redox system in developing Atlantic cod (Gadus morhua) larvae

Samuel Penglase, Rolf Edvardsen, Tomasz Furmanek, Ivar Rønnestad, Ørjan Karlsen, Terje van der Meeren, Kristin Hamre
Redox Biology 5 p. 308-318
2014

Global transcriptome analysis identifies regulated transcripts and pathways activated during oogenesis and early embryogenesis in atlantic cod

Lene Kleppe, Rolf Edvardsen, Tomasz Furmanek, Geir Lasse Taranger, Anna Wargelius
Molecular Reproduction and Development 81 p. 619-635
2014

Gene expression in five salmon louse (Lepeophtheirus salmonis, Krøyer 1837) tissues

Rolf Edvardsen, Sussie Trine Dalvin, Tomasz Furmanek, Ketil Malde, Stig Mæhle, Bjørn Olav Kvamme, Rasmus Skern-Mauritzen
Marine Genomics 18 p. 39-44
2014

Transcriptome sequencing of Atlantic salmon (Salmo salar L.) notochord prior to development of the vertebrae provides clues to regulation of positional fate, chordoblast lineage and mineralisation

Shou Wang, Tomasz Furmanek, Harald Kryvi, Christel Krossøy, Geir Kåre Totland, Sindre Grotmol, Anna Wargelius
BMC Genomics 15:141
2013

Mineralization of the vertebral bodies in Atlantic salmon (Salmo salar L.) is initiated segmentally in the form of hydroxyapatite crystal accretions in the notochord sheath

Shou Wang, Harald Kryvi, Sindre Grotmol, Anna Wargelius, Christel Krossøy, Matthias Epple, Frank Neues, Tomasz Furmanek, Geir Kåre Totland
Journal of Anatomy 223 p. 159-170
2013

Genomic divergence between the migratory and stationary ecotypes of Atlantic cod

Bård Ove Karlsen, Kevin Klingan, Åse Emblem, Tor Erik Jørgensen, Alexander Jüterbock, Tomasz Furmanek, Galice Hoarau, Steinar Johansen, Jarle Tryti Nordeide, Truls Borg Moum
Molecular Ecology 22 p. 5098-5111
2013

Increasing Sequence Search Sensitivity with Transitive Alignments

Ketil Malde, Tomasz Furmanek
PLoS ONE 8
2012

Maternal 3 ' UTRs: from egg to onset of zygotic transcription in Atlantic cod

Lene Kleppe, Rolf Edvardsen, H Kuhl, Ketil Malde, Tomasz Furmanek, O Drivenes, R Reinhardt, Geir Lasse Taranger, Anna Wargelius
BMC Genomics 13
2012

Differential expression patterns of conserved miRNAs and isomiRs during Atlantic halibut development

Teshome Bizuayehu, Carlos Fredrico Ceccon Lanes, Tomasz Furmanek, Bård Ove Karlsen, Jorge Fernandes, Steinar Johansen, Igor Babiak
BMC Genomics 13
2011

Developmentally regulated expression of intracellular Fgf11-13, hormone-like Fgf15 and canonical Fgf16,-17 and-20 mRNAs in the developing mouse molar tooth

Paivi Kettunen, Tomasz Furmanek, Rajib Chaulagain, Inger Hals Kvinnsland, Keijo Luukko
Acta Odontologica Scandinavica 69 p. 360-366
2011

RNA deep sequencing of the Atlantic cod transcriptome

Steinar Daae Johansen, Bård Ove Karlsen, Tomasz Furmanek, morten Andreassen, Tor Erik Jørgensen, Teshome Bizuayehu, Ragna Breines, Åse Emblem, Paivi Kettunen, Keijo Luukko, Rolf Edvardsen, Jarle Tryti Nordeide, Dag-Hugo Coucheron, Truls Moum
Comparative Biochemistry and Physiology - Part D:Genomics and Proteomics 6 p. 18-22
2009

Large-scale sequence analyses of Atlantic cod

Dag H. Coucheron, Morten Andreassen, Bård O. Karlsen, Tomasz Furmanek, Tor Erik Jørgensen, Åse Emblem, Ragna Breines, Jarle Tryti Nordeide, Steinar D. Johansen, Truls Moum, Alexander J. Nederbragt, Nils Christian Stenseth, Kjetill S. Jakobsen
New Biotechnology 25 p. 263-271
2009

Large-scale sequence analyses of Atlantic cod

Steinar Johansen, Dag-Hugo Coucheron, morten Andreassen, Bård Ove Karlsen, T Furmanek, TE Jorgensen, Tor Erik Jørgensen, A Emblem, Åse Emblem, Ragna Breines, JT Nordeide, Truls Moum, AJ Nederbragt, Nils Christian Stenseth, KS Jakobsen
New Biotechnology 25 p. 263-271
2008

Secondary induction and the development of tooth nerve supply

Keijo Luukko, Kyaw Moe, Angelina Clarisa Sijaona, Tomasz Furmanek, Inger Hals Kvinnsland, Marit Midtbø, Paivi Kettunen
Annals of Anatomy 190 p. 178-187
2008

Vesicular release of glutamate from hippocampal neurons in culture: an immunocytochemical assay

Leif Oltedal, Camilla Haglerød, Tomasz Furmanek, Svend Davanger
Experimental Brain Research 184 p. 479-492
2007

Fgfr2b mediated epithelial-mesenchymal interactions coordinate tooth morphogenesis and dental trigeminal axon patterning

Paivi Kettunen, Bradley Spencer-Dene, Tomasz Furmanek, Inger Hals Kvinnsland, Clive Dickson, Irma Thesleff, Keijo Luukko
Mechanisms of Development 124 p. 868-883
2005

Coordination of trigeminal axon navigation and patterning with tooth organ formation: epithelial-mesenchymal interactions, and epithelial Wnt4 and Tgfβ1 regulate semaphorin 3a expression in the dental mesenchyme

Paivi Kettunen, Sigbjørn Suk Løes, Tomasz Michal Furmanek, Karianne Fjeld, Inger Rebekka Hals Kvinnsland, Oded Behar, Takeshi Yagi, Hajime Fujisawa, Seppo Vainio, Masahiko Taniguchi, Keijo Luukko
Development 132 p. 323-334
2005

Large-scale enhancer detection in the zebrafish genome

Ståle Ellingsen, Mary Laplante, Melanie Kønig, Tomasz Michal Furmanek, Hiroshi Kikuta, Erling Andre Høivik, Thomas S. Becker
Development 132 p. 3799-3811
2005

Dynamic expression of Wnt signaling-related Dickkopf1,-2, and-3 mRNAs in the developing mouse tooth

Karianne Fjeld, Paivi Kettunen, Tomasz Michal Furmanek, Inger Rebekka Hals Kvinnsland, Keijo Luukko
Developmental Dynamics 233 p. 161-166
2003

Identification of a novel putative signaling center, the tertiary enamel knot in the postnatal mouse molar tooth

Keijo Luukko, Sigbjørn Suk Løes, Tomasz Furmanek, Karianne Fjeld, Inger Hals Kvinnsland, Paivi Kettunen
Mechanisms of Development 120 p. 270-276
2003

Identification of a novel putative signaling center, the tertiary enamel knot in the postnatal mouse molar tooth

Keijo Aukusti Luukko, Sigbjorn Loes, Tomasz Furmanek, Karianne Fjeld, Inger Hals Kvinnsland, Paivi Johanna Kettunen
Mechanisms of Development 120 p. 270-276

Rapporter og avhandlinger

2003

3D visualization and quantification of viability and gene expression in thick tissue samples

Furmanek, Tomasz

Poster

2018

Features of the interbrancheal lymphoid tissue (ILT) in the Atlantic salmon

Lars Austbø, Ida Bergva Aas, Rolf Edvardsen, Tomasz Furmanek, Erling Olaf Koppang
2015

Diet affects the redox system in developing Atlantic cod (Gadus morhua) larvae

Kristin Hamre, Samuel Penglase, Rolf Edvardsen, Tomasz Furmanek, Ørjan Karlsen, Terje van der Meeren, Ivar Rønnestad
2015

SCREENING FOR STERILITY CANDIDATE GENES IN ATLANTIC SALMON (SALMO SALAR)

Lene Kleppe, Rolf Edvardsen, Tomasz Furmanek, Eva Andersson, Anna Wargelius
2014

SMALL RNAS IN IMMATURE AND MATURE TESTIS OF ATLANTIC SALMON (SALMO SALAR L.)

Kai Ove Skaftnesmo, Rolf Edvardsen, Tomasz Furmanek, Eva Andersson, Lene Kleppe, Jan Bogerd, Rüdiger W. Schulz, Geir Lasse Taranger, Anna Wargelius
2011

SMALLRNAS IN ATLANTIC HALIBUT (Hippoglossus hippoglossus L.)

Teshome Bizuayehu, Carlos Fredrico Ceccon Lanes, Tomasz Furmanek, Bård Ove Karlsen, Joanna Babiak, Jorge Fernandes, Steinar Daae Johansen, Igor Babiak
2011

Investigating miRNAs and transcriptomes at our local SOLiD sequencing facility

Steinar Daae Johansen, morten Andreassen, Igor Babiak, Teshome Bizuayehu, Dag-Hugo Coucheron, M. Raafat El-Gewely, Åse Emblem, Tonje Fiskaa, Tomasz Furmanek, kari b. Haugli, Bård Ove Karlsen, Kevin Klingan, Erik Knutsen, Tor Erik Jørgensen, Truls Borg Moum, Jarle Tryti Nordeide, Siri Okkenhaug, Ole Petter Rekvig, ole morten Seternes, anita Ursvik
2010

MicroRNA profiling using Solid 3 platform during early development of Atlantic halibut (Hippoglossus hippoglossus)

Steinar D. Johansen, Teshome Bizuayehu, Carlos Frederico Ceccon Lanes, Tomasz Furmanek, Bård O. Karlsen, Jorge Fernandes, Igor Babiak
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